mbQTL - mbQTL: A package for SNP-Taxa mGWAS analysis
mbQTL is a statistical R package for simultaneous 16srRNA,16srDNA (microbial) and variant, SNP, SNV (host) relationship, correlation, regression studies. We apply linear, logistic and correlation based statistics to identify the relationships of taxa, genus, species and variant, SNP, SNV in the infected host. We produce various statistical significance measures such as P values, FDR, BC and probability estimation to show significance of these relationships. Further we provide various visualization function for ease and clarification of the results of these analysis. The package is compatible with dataframe, MRexperiment and text formats.
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snpmicrobiomewholegenomemetagenomicsstatisticalmethodregression
4.56 score 1 stars 36 scripts 303 downloads
mirTarRnaSeq - mirTarRnaSeq
mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.
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mirnaregressionsoftwaresequencingsmallrnatimecoursedifferentialexpression
4.20 score 16 scripts 400 downloads